List of Compounds

Compound Formula HMDB ID Synonyms Is Tracer Total Animal By Tracer Parent Compound
glucose C6H12O6 HMDB0000122 D-Glucose; Glucose; dextrose; glucose yes 35
glutamine C5H10N2O3 HMDB0000641 Glutamine; L-Glutamine; gln; glutamine yes 25
lactate C3H6O3 HMDB0000190 2-hydroxypropanoate; 2-hydroxypropanoic acid; L-Lactic acid; Lactate; lactate; lactic acid yes 48
hydroxypropionic acid C3H6O3 HMDB0000700 Hydroxypropionic acid; hydroxypropionic acid no None
D-fructose C6H12O6 HMDB0000660 D-fructose no None
galactose C6H12O6 HMDB0000143 D-Galactose; Galactose; galactose no None
L-gulose C6H12O6 HMDB0012326 L-gulose no None
mannose C6H12O6 HMDB0000169 Mannose; mannose no None
myo-inositol C6H12O6 HMDB0000211 Myo-inositol; inositol; myo-inositol no None
alanine C3H7NO2 HMDB0000161 Alanine; L-alanine; ala; alanine yes 6
beta-alanine C3H7NO2 HMDB0000056 3-aminopropanoic acid; Beta-alanine; b-Alanine; beta-Alanine; beta-alanine; Β-alanine no None
sarcosine C3H7NO2 HMDB0000271 Sarcosine; sarcosine no None
leucine C6H13NO2 HMDB0000687 L-Leucine; Leucine; leu; leucine yes 16
isoleucine C6H13NO2 HMDB0000172 Isoleucine; L-Isoleucine; isoleucine yes 12
xylose C5H10O5 HMDB0000098 D-xylose; Xylose; xylose no None
valine C5H11NO2 HMDB0000883 L-Valine; Valine; val; valine yes 12
succinate C4H6O4 HMDB0000254 Succinate; succinate; succinic acid no None
C18:0 C18H36O2 HMDB0000827 C18:0; octadecanoic acid; stearate; stearic acid no None
serine C3H7NO3 HMDB0000187 L-Serine; Serine; ser; serine no None
pyruvate C3H4O3 HMDB0000243 2-ketopropionate; 2-ketopropionic acid; 2-oxopropanoate; 2-oxopropanoic acid; Pyruvate; pyruvate; pyruvic acid no None
proline C5H9NO2 HMDB0000162 (2S)-pyrrolidine-2-carboxylic acid; L-Proline; Proline; proline no None
N-octanoylglycine C10H19NO3 HMDB0000832 N-octanoylglycine; capryloylglycine no None
methylsuccinic acid C5H8O4 HMDB0001844 Methylsuccinic acid; methylsuccinate; methylsuccinic acid no None
methionine C5H11NO2S HMDB0000696 L-Methionine; Methionine; met; methionine no None
malate C4H6O5 HMDB0000156 L-Malic acid; Malate; hydroxysuccinate; hydroxysuccinic acid; malate; malic acid no None
glycine C2H5NO2 HMDB0000123 2-aminoacetate; Glycine; glycine no None
citrate C6H8O7 HMDB0000094 Citrate; citrate; citric acid no None
isocitrate C6H8O7 HMDB0000193 Isocitrate; isocitrate no None
aminoadipic acid C6H11NO4 HMDB0000510 Aminoadipic acid; aminoadipic acid no None
aconitate C6H6O6 HMDB0000072 Aconitate; aconitate; aconitic acid; cis-Aconitic acid no None
3-hydroxybutyrate C4H8O3 HMDB0000011 3-HB; 3-hydroxybutyrate; 3-hydroxybutyric acid; 3HB; B-HB; BHB; beta-hydroxybutyrate; beta-hydryoxybutyric acid yes 18
methylmalonic acid C4H6O4 HMDB0000202 Methylmalonic acid; methylmalonic acid no None
2-hydroxybutyric acid C4H8O3 HMDB0000008 2-hydroxybutyric acid no None
3-hydroxyisobutyrate C4H8O3 HMDB0000023 (S)-3-hydroxyisobutyric acid; 3-hydroxyisobutyrate no None
D-arabinose C5H10O5 HMDB0029942 D-arabinose no None
pectin C5H10O5 HMDB0003402 Pectin; pectin no None
ribose C5H10O5 HMDB0000283 D-Ribose; Ribose; ribose no None
5-aminopentanoic acid C5H11NO2 HMDB0003355 5-aminopentanoic acid; 5-aminovaleric acid no None
N-methyl-a-aminoisobutyric acid C5H11NO2 HMDB0002141 N-methyl-a-aminoisobutyric acid no None
norvaline C5H11NO2 HMDB0013716 Norvaline; norvaline no None
dimethylmalonic acid C5H8O4 HMDB0002001 Dimethylmalonic acid; dimethylmalonic acid no None
ethylmalonic acid C5H8O4 HMDB0000622 Ethylmalonic acid; ethylmalonic acid no None
glutaric acid C5H8O4 HMDB0000661 Glutaric acid; glutaric acid no None
N-methyl-L-glutamic acid C6H11NO4 HMDB0062660 N-methyl-L-glutamic acid no None
dehydroascorbic acid C6H6O6 HMDB0001264 Dehydroascorbic acid; dehydroascorbic acid no None
trans-aconitic acid C6H6O6 HMDB0000958 Trans-aconitic acid; trans-aconitic acid no None
3,5,3',5'-Tetraiodo-L-thyronine C15H11I4NO4 HMDB0000248 3,5,3',5'-Tetraiodo-L-thyronine; 3,5,3’,5'-tetraiodo-L-thyronine; T4; thyroxine no None
2-keto-isocaproate C6H10O3 HMDB0000695 2-keto-isocaproate; 4-methyl-2-oxopentanoic acid; 4-methyl-2-oxovaleric acid; ketoisocaproate; ketoleucine no None
2-keto-methylvalerate C6H9O3 HMDB0000491 2-keto-methylvalerate; 3-methyl-2-oxopentanoate; 3-methyl-2-oxovalerate; 3-methyl-2-oxovaleric acid no None
2-keto-isovalerate C5H8O3 HMDB0000019 2-keto-3-methylbutyric acid; 2-keto-isovalerate; 2-ketoisovaleric acid; 3-methyl-2-oxobutanoic acid; alpha-ketoisovaleric acid no None
C16:0 C16H32O2 HMDB0000220 C16; C16 fatty acid; C16:0; PA; hexadecanoate; hexadecoic acid; palmitate; palmitic acid yes 18
C18:1 C18H34O2 HMDB0000207 18:1 FA; C18:1; cis-9-octadecenoic acid; cis-oleate; oleate; oleic acid yes 2
C18:2 C18H32O2 HMDB0000673 9,12-Octadecadienoic acid; C18:2; LA; linoleate; linoleic acid no None
a-ketoglutarate C5H6O5 HMDB0000208 2-ketoglutarate; 2-ketoglutaric acid; 2-oxoglutarate; 2-oxoglutaric acid; A-ketoglutarate; Oxoglutaric acid; a-ketoglutarate; a-ketoglutaric acid; alpha-ketoglutaric acid; oxoglutarate no None
asparagine C4H8N2O3 HMDB0000168 Asn; Asparagine; L-Asparagine; N; asn; asparagine no None
b-aminoisobutyrate(baiba) C4H9NO2 HMDB0003911 2-methyl-beta-alanine; 3-aminoisobutanoic acid; B-aminoisobutyrate(baiba); BAIB; b-aminoisobutyrate; b-aminoisobutyrate(baiba); baiba no None
carnosine C9H14N4O3 HMDB0000033 Carnosine; carnosine no None
creatine C4H9N3O2 HMDB0000064 Creatine; creatine no None
creatinine C4H7N3O HMDB0000562 Creatinine; creatinine no None
glutamate C5H9NO4 HMDB0000148 2-aminoglutarate; 2-aminoglutaric acid; Glutamate; L-Glutamic acid; glu; glutamate no None
glycerol C3H8O3 HMDB0000131 Glycerol; glycerol yes 7
homocarnosine C10H16N4O3 HMDB0000745 Homocarnosine; homocarnosine no None
lysine C6H14N2O2 HMDB0000182 L-Lysine; Lysine; lys; lysine no None
phenylalanine C9H11NO2 HMDB0000159 L-Phenylalanine; Phenylalanine; phe; phenylalanine no None
threonine C4H9NO3 HMDB0000167 L-Threonine; Threonine; thr; threonine no None
tryptophan C11H12N2O2 HMDB0000929 L-Tryptophan; Tryptophan; trp; tryptophan no None
anserine C10H16N4O3 HMDB0000194 Anserine; L-Anserine; anserine no None
3-ureidopropionic acid C4H8N2O3 HMDB0000026 3-(carbamoylamino)propanoic acid; 3-ureidopropionic acid; ureidopropionic acid no None
glycyl-glycine C4H8N2O3 HMDB0011733 Glycyl-glycine; glycyl-glycine no None
2-aminoisobutyric acid C4H9NO2 HMDB0001906 2-aminoisobutyric acid no None
D-alpha-aminobutyric acid C4H9NO2 HMDB0000650 D-alpha-aminobutyric acid no None
dimethylglycine C4H9NO2 HMDB0000092 2-(dimethylamino)acetic acid; Dimethylglycine; N,N-Dimethylglycine; dimethylglycine no None
gamma-aminobutyric acid C4H9NO2 HMDB0000112 Gamma-aminobutyric acid; gamma-aminobutyric acid no None
L-homoserine C4H9NO3 HMDB0000719 L-homoserine no None
levulinic acid C5H8O3 HMDB0000720 Levulinic acid; levulinic acid no None
N-acetylserine C5H9NO4 HMDB0002931 N-acetylserine no None
N-methyl-D-aspartic acid C5H9NO4 HMDB0002393 N-methyl-D-aspartic acid no None
o-acetylserine C5H9NO4 HMDB0003011 O-acetylserine; o-acetylserine no None
2-methyl-3-ketovaleric acid C6H10O3 HMDB0000408 2-methyl-3-ketovaleric acid no None
ethyl acetoacetate C6H10O3 HMDB0031216 Ethyl acetoacetate; ethyl 3-oxobutanoate; ethyl acetoacetate no None
aspartate C4H7NO4 HMDB0000191 Asp; Aspartate; D; L-Aspartic acid; asp; aspartate; aspartic acid no None
tyrosine C9H11NO3 HMDB0000158 L-Tyrosine; Tyrosine; tyr; tyrosine no None
uracil C4H4N2O2 HMDB0000300 1,2,3,4-tetrahydropyrimidine-2,4-dione; 2,4-Dihydroxypyrimidine; U; Ura; Uracil; uracil no None
2-hydroxyglutarate C5H8O5 HMDB0059655 2-hydroxyglutarate no None
hexose-phosphate C6H13O9P FakeHMDB001 Hexose-phosphate; hexose-phosphate no None
citramalic acid C5H8O5 HMDB0000426 Citramalic acid; citramalic acid no None
L-2-hydroxyglutaric acid C5H8O5 HMDB0000694 L-2-hydroxyglutaric acid no None
ribonolactone C5H8O5 HMDB0001900 Ribonolactone; ribonolactone no None
fructose 1-phosphate C6H13O9P HMDB0001076 Fructose 1-phosphate; fructose 1-phosphate no None
fructose 6-phosphate C6H13O9P HMDB0000124 Fructose 6-phosphate; fructose 6-phosphate no None
glucose 1-phosphate C6H13O9P HMDB0001586 Glucose 1-phosphate; glucose 1-phosphate; glucose-1-phosphate no None
glucose-6-phosphate C6H13O9P HMDB0001401 G6P; GLC6p; Glucose 6-phosphate; Glucose-6-phosphate; glucose-6-phosphate no None
mannose 6-phosphate C6H13O9P HMDB0001078 Mannose 6-phosphate; mannose 6-phosphate no None
fatty acid C14:0 C14H28O2 HMDB0000806 C14:0; C14:0(Myristic acid); Fatty acid C14:0; fatty acid C14:0; myristic acid no None
fatty acid C14:1 C14H26O2 HMDB0002000 C14:1; Fatty acid C14:1; Myristoleic acid C14:1; fatty acid C14:1; myristoleic acid no None
fatty acid C14:2 C14H24O2 FakeHMDB002 C14:2; Fatty acid C14:2; fatty acid C14:2 no None
fatty acid C15:2 C15H26O2 FakeHMDB003 C15:2; Fatty acid C15:2; fatty acid C15:2 no None
fatty acid C16:1 C16H30O2 HMDB0003229 C16:1; Fatty acid C16:1; fatty acid C16:1 no None
fatty acid C16:2 C16H28O2 FakeHMDB004 C16:2; Fatty acid C16:2; fatty acid C16:2 no None
fatty acid C17:0 C17H34O2 HMDB0061709 15-Methylpalmitate; C17:0; Fatty acid C17:0; fatty acid C17:0 no None
fatty acid C17:1 C17H32O2 FakeHMDB005 C17:1; Fatty acid C17:1; fatty acid C17:1 no None
fatty acid C17:2 C17H30O2 FakeHMDB006 C17:2; Fatty acid C17:2; fatty acid C17:2 no None
fatty acid C18:3 C18H30O2 HMDB0001388 C18:3; Fatty acid C18:3; alpha-linolenic acid; fatty acid C18:3 no None
fatty acid C18:4 C18H28O2 FakeHMDB007 C18:4; Fatty acid C18:4; fatty acid C18:4 no None
fatty acid C19:0 C19H38O2 FakeHMDB008 C19:0; Fatty acid C19:0; fatty acid C19:0 no None
fatty acid C19:1 C19H36O2 FakeHMDB009 C19:1; Fatty acid C19:1; fatty acid C19:1 no None
fatty acid C20:0 C20H40O2 HMDB0002212 Fatty acid C20:0; arachidic acid; c20:0; fatty acid C20:0 no None
fatty acid C20:1 C20H38O2 FakeHMDB011 C20:1; Fatty acid C20:1; fatty acid C20:1 no None
fatty acid C20:2 C20H36O2 FakeHMDB012 C20:2; Fatty acid C20:2; fatty acid C20:2 no None
fatty acid C20:3 C20H34O2 FakeHMDB013 C20:3; Fatty acid C20:3; fatty acid C20:3 no None
fatty acid C20:4 C20H32O2 HMDB0001043 C20:4; Fatty acid C20:4; arachidonic acid; fatty acid C20:4 no None
fatty acid C20:5 C20H30O2 HMDB0001999 C20:5; Fatty acid C20:5; eicosapentaenoic acid; fatty acid C20:5 no None
fatty acid C21:1 C21H40O2 FakeHMDB014 C21:1; Fatty acid C21:1; fatty acid C21:1 no None
fatty acid C21:3 C21H36O2 FakeHMDB015 C21:3; Fatty acid C21:3; fatty acid C21:3 no None
fatty acid C21:4 C21H34O2 FakeHMDB016 C21:4; Fatty acid C21:4; fatty acid C21:4 no None
fatty acid C21:5 C21H32O2 FakeHMDB017 C21:5; Fatty acid C21:5; fatty acid C21:5 no None
fatty acid C22:0 C22H44O2 FakeHMDB018 C22:0; Fatty acid C22:0; fatty acid C22:0 no None
fatty acid C22:1 C22H42O2 HMDB0002068 C22:1; Fatty acid C22:1; erucic acid; fatty acid C22:1 no None
fatty acid C22:2 C22H40O2 FakeHMDB019 C22:2; Fatty acid C22:2; fatty acid C22:2 no None
fatty acid C22:3 C22H38O2 FakeHMDB020 C22:3; Fatty acid C22:3; fatty acid C22:3 no None
fatty acid C22:4 C22H36O2 FakeHMDB021 C22:4; Fatty acid C22:4; fatty acid C22:4 no None
fatty acid C22:5 C22H34O2 FakeHMDB022 C22:5; Fatty acid C22:5; fatty acid C22:5 no None
fatty acid C22:6 C22H32O2 HMDB0002183 C22:6; Docosahexaenoic acid; Fatty acid C22:6; fatty acid C22:6 no None
fatty acid C23:1 C23H44O2 FakeHMDB023 C23:1; Fatty acid C23:1; fatty acid C23:1 no None
fatty acid C24:0 C24H48O2 FakeHMDB024 C24:0; Fatty acid C24:0; fatty acid C24:0 no None
fatty acid C24:1 C24H46O2 FakeHMDB025 C24:1; Fatty acid C24:1; fatty acid C24:1 no None
fatty acid C24:2 C24H44O2 FakeHMDB026 C24:2; Fatty acid C24:2; fatty acid C24:2 no None
fatty acid C24:4 C24H40O2 FakeHMDB027 C24:4; Fatty acid C24:4; fatty acid C24:4 no None
fatty acid C24:5 C24H38O2 FakeHMDB028 C24:5; Fatty acid C24:5; fatty acid C24:5 no None
fatty acid C24:6 C24H36O2 FakeHMDB029 C24:6; Fatty acid C24:6; fatty acid C24:6 no None
fatty acid C26:1 C26H50O2 FakeHMDB030 C26:1; Fatty acid C26:1; fatty acid C26:1 no None
fatty acid C34:1 C34H66O2 FakeHMDB031 C34:1; Fatty acid C34:1; fatty acid C34:1 no None
diacylglycerol 28:0 C31H59O5Na FakeHMDB032 DG_Na(28:0); Diacylglycerol 28:0; diacylglycerol 28:0 no None
diacylglycerol 30:0 C33H63O5Na FakeHMDB033 DG_Na(30:0); Diacylglycerol 30:0; diacylglycerol 30:0 no None
lysophospholipid 14:0 C22H46NO7P HMDB0010379 LPC(14:0); LysoPC(14:0); Lysophospholipid 14:0; lysophospholipid 14:0 no None
lysophospholipid 16:0 C24H50NO7P FakeHMDB034 LPC(16:0); Lysophospholipid 16:0; lysophospholipid 16:0 no None
lysophosphatidylethanolamine 16:0 C21H44NO7P FakeHMDB035 LPE(16:0); Lysophosphatidylethanolamine 16:0; lysophosphatidylethanolamine 16:0 no None
lysophosphatidylethanolamine 20:0 C25H52NO7P FakeHMDB036 LPE(20:0); Lysophosphatidylethanolamine 20:0; lysophosphatidylethanolamine 20:0 no None
lysophosphatidylethanolamine 20:1 C25H50NO7P FakeHMDB037 LPE(20:1); Lysophosphatidylethanolamine 20:1; lysophosphatidylethanolamine 20:1 no None
lysophosphatidylethanolamine 20:2 C25H48NO7P FakeHMDB038 LPE(20:2); Lysophosphatidylethanolamine 20:2; lysophosphatidylethanolamine 20:2 no None
lysophosphatidylethanolamine 20:4 C25H44NO7P FakeHMDB039 LPE(20:4); Lysophosphatidylethanolamine 20:4; lysoPE(20:4); lysophosphatidylethanolamine 20:4 no None
lysophosphatidylethanolamine 20:5 C25H42NO7P FakeHMDB040 LPE(20:5); Lysophosphatidylethanolamine 20:5; lysophosphatidylethanolamine 20:5 no None
lysophosphatidylethanolamine 22:4 C27H48NO7P FakeHMDB041 LPE(22:4); Lysophosphatidylethanolamine 22:4; lysophosphatidylethanolamine 22:4 no None
lysophosphatidylethanolamine 22:6 C27H44NO7P FakeHMDB042 LPE(22:6); Lysophosphatidylethanolamine 22:6; lysophosphatidylethanolamine 22:6 no None
lysophosphatidylserine 20:0 C26H52NO9P FakeHMDB043 LPS(20:0); Lysophosphatidylserine 20:0; lysophosphatidylserine 20:0 no None
lysophosphatidylserine 22:0 C28H56NO9P FakeHMDB044 LPS(22:0); Lysophosphatidylserine 22:0; lysophosphatidylserine 22:0 no None
lysophosphatidylserine 22:1 C28H54NO9P FakeHMDB045 LPS(22:1); Lysophosphatidylserine 22:1; lysophosphatidylserine 22:1 no None
lysophosphatidylserine 22:2 C28H52NO9P FakeHMDB046 LPS(22:2); Lysophosphatidylserine 22:2; lysophosphatidylserine 22:2 no None
sphingolipid d18:1 C23H49N2O5P FakeHMDB047 Lyso SM(d18:1); Sphingolipid d18:1; sphingolipid d18:1 no None
monoacylglycerol NH4(20:6) C23H33O4NH4 FakeHMDB048 MG_NH4(20:6); Monoacylglycerol NH4(20:6); monoacylglycerol NH4(20:6) no None
monoacylglycerol NH4(22:6) C25H37O4NH4 FakeHMDB049 MG_NH4(22:6); Monoacylglycerol NH4(22:6); monoacylglycerol NH4(22:6) no None
monoacylglycerol Na(22:4) C25H41O4Na FakeHMDB050 MG_Na(22:4); Monoacylglycerol Na(22:4); monoacylglycerol Na(22:4) no None
sphingasine-1-phosphate-dimethyl(d18:1) C20H44NO5P HMDB0000277 Sphingasine-1-phosphate-dimethyl(d18:1); sphingasine-1-phosphate-dimethyl(d18:1); sphingosine-1-phosphate (d18:1) no None
3-phosphoglycerate C3H7O7P HMDB0000807 3-Phosphoglyceric acid; 3-phosphoglycerate; 3PG; glycerate 3-phosphate no None
glyceraldehyde-3-phosphate C3H7O6P HMDB0001112 D-Glyceraldehyde 3-phosphate; Glyceraldehyde-3-phosphate; glyceraldehyde-3-phosphate no None
fructose-1-6-bisphosphate C6H14O12P2 HMDB0001058 Fructose-1-6-bisphosphate; diphosphofructose; fructose 1,6-bisphosphate; fructose 1,6-diphosphate; fructose-1,6-diphosphate; fructose-1-6-bisphosphate no None
dihydroxy-acetone-phosphate C3H7O6P HMDB0001473 DHAP; Dihydroxy-acetone-phosphate; dihydroxy-acetone-phosphate; dihydroxyacetone phosphate no None
2-phosphoglyceric acid C3H7O7P HMDB0000362 2-phosphoglyceric acid no None
arginine C6H14N4O2 HMDB0000517 Arginine; L-Arginine; R; arg; arginine no None
kynurenic acid C10H7NO3 HMDB0000715 Kynurenic acid; kynurenic acid no None
fumarate C4H4O4 HMDB0000134 Fumarate; fumarate; fumaric acid no None
maleic acid C4H4O4 HMDB0000176 Maleic acid; maleic acid no None
histidine C6H9N3O2 HMDB0000177 H; His; Histidine; L-Histidine; histidine no None
glycerol-3-phosphate C3H9O6P HMDB0000126 G3P; Glycerol-3-phosphate; glycerol 3-phosphate; glycerol-3-phosphate; glycerophosphate no None
taurine C2H7NO3S HMDB0000251 2-aminoethanesulfonic acid; Taurine; taurine no None